PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g06500
Common NameGSCOC_T00039186001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-X1
Protein Properties Length: 615aa    MW: 68913.9 Da    PI: 8.5044
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g06500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-053857120
     zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                 CG+H C++ CH+G+C++Cp+
  Cc02_g06500 38 CGRHVCERGCHKGNCGECPL 57
                 ******************95 PP

2zf-NF-X118.64.1e-06145164120
     zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                  CG+H C++ C+ G+CppC++
  Cc02_g06500 145 CGRHACKRRCCDGDCPPCSE 164
                  ******************85 PP

3zf-NF-X116.91.4e-05174191320
     zf-NF-X1   3 kHkCqklCHeGpCppCpq 20 
                  +HkC ++CH+G C pCp+
  Cc02_g06500 174 NHKCPAPCHRGACSPCPL 191
                  7***************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060082.02E-82871No hitNo description
SMARTSM004380.00243857IPR000967Zinc finger, NF-X1-type
PfamPF014220.00773856IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-882131No hitNo description
SMARTSM004380.08192112IPR000967Zinc finger, NF-X1-type
PfamPF014220.003492111IPR000967Zinc finger, NF-X1-type
CDDcd060081.03E-7135183No hitNo description
SMARTSM004380.0092145164IPR000967Zinc finger, NF-X1-type
PfamPF014225.7E-4145163IPR000967Zinc finger, NF-X1-type
CDDcd060081.40E-9162210No hitNo description
SMARTSM004380.0088172191IPR000967Zinc finger, NF-X1-type
PfamPF014220.0071172190IPR000967Zinc finger, NF-X1-type
SMARTSM0043841235250IPR000967Zinc finger, NF-X1-type
PfamPF014223.2239249IPR000967Zinc finger, NF-X1-type
SMARTSM00438170258303IPR000967Zinc finger, NF-X1-type
PfamPF0142252258267IPR000967Zinc finger, NF-X1-type
SMARTSM004384.1340372IPR000967Zinc finger, NF-X1-type
PfamPF014220.094340350IPR000967Zinc finger, NF-X1-type
SMARTSM004386382400IPR000967Zinc finger, NF-X1-type
PfamPF014220.71384398IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8445466IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MCRKKGVYKC QCGKVELERE CCERIFRCEN PCQKLLGCGR HVCERGCHKG NCGECPLQGK  60
RTCPCGKRVY EGMACDVAVP LCGATCDKLL SCGFHRCPER CHRGPCIETC RTVVTKSCRC  120
GSARKQIPCY QDLTCERKCQ KVRDCGRHAC KRRCCDGDCP PCSEICDRRL RCRNHKCPAP  180
CHRGACSPCP LMVMISCSCG ETHFEVPCGT ETEQKPPKCP KRCRVAPLCT HRLICKPHKC  240
HYGACPPCRL ICDEEYSCGH KCKLRCHGPR PPALPEFTLK PKKKKSSHEA EHIPGTLCPP  300
CPELVWRSCV GNHIGAERMM ICSNPAEFSC DNLCGTLLSC GNHYCTKICH ALKSDSKSYS  360
SVLAESCEEC NLPCQKERSP PCPHPCPLVC HPGECPPCHS LIKRACHCGA MVHALKCIYY  420
NSLDEREQVA VRSCGGPCHR KLPNCTHLCP EICHRGQCPS PDKCSKKVIV RCGCQTLKKE  480
WSCKDVQEAY RNAGSDPKDV PKTQFGLGLL PCDPDCRSKM KITDSELQLR KSKKEPDGEK  540
PVAKRRRRRE RVQEDKKVSR LQVISGATRK VLLIVIILVT LIAVAYCGYN GLLWLSDWMN  600
EAELQRQRRI YPRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1543548KRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009586602.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A068V0H50.0A0A068V0H5_COFCA; Uncharacterized protein
STRINGSolyc06g051570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93951921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors